Kemal Yaylali
@kemal
Coding for Computational Biology and Process Design
Description
Hi, I'm Kemal — a senior bioreactor engineer based in Cambridge, UK.
I spent years designing bioreactors the conventional way. Then I fell for machine learning, model predictive control, and the rest of the data-science toolbox and I started writing Python to bring those ideas into bioprocess engineering, mostly on the upstream side: fermentation, cell culture, soft sensors, process modelling, and smarter control of living systems.
What your support funds:
- Open-source Python packages for bioprocess modelling and bioreactor control
- Tutorials and worked examples bridging ML/MPC and wet-lab reality
- Time to document, maintain, and answer questions, the unglamorous work that keeps tools usable
I'm not a full-time, hardcore developer. I'm an engineer who codes because the tools I wanted didn't exist yet. Every contribution buys more time to build good, free things for the computational biology community.
Thank you for keeping the bioreactors (and the code) running. 🧫
Linked Accounts
kemal owns the following accounts on other platforms:
Repositories
redoxquant Stars 0 Updated 2 months ago
Open companion library for Amperia (RED) protein-quantification analysis exports
biapy-hub Stars 0 Updated 2 months ago
ashvale-station Stars 1 Updated 2 months ago
Online machine learning weather forecasting for a Raspberry Pi Zero 2 W and Sense HAT, with calibrated uncertainty and public self-verification.
generative-microscopy Stars 0 Updated 3 months ago
Generative-art sketches simulating what things look like under a microscope — cell physics, optics, and imaging artifacts modeled from first principles.
cell-rejuvenation-atlas Stars 2 Updated 3 months ago
Cell Rejuvenation Atlas — open-source analysis atlas (AGPL-3.0)
hybrid-bioprocess-lab Stars 0 Updated 4 months ago
A personal lab for practising production-grade ML engineering on hybrid bioprocess models
epibarrett Stars 0 Updated 4 months ago
denoise Stars 0 Updated 5 months ago
Video background noise removal — audio-only, video stream never re-encoded
tilscope Stars 0 Updated 5 months ago
Reproducible single-cell tooling for the tumour microenvironment, with an LLM-written report.
cho-digital-twin Stars 2 Updated 5 months ago
perfusio Stars 1 Updated 6 months ago
CellSeg Stars 0 Updated 6 months ago
Cell segmentation Android app using Cellpose ONNX
cellseg-site Stars 0 Updated 6 months ago
CellSeg website — cellseg.yaylali.uk
antibody-developability-ml Stars 1 Updated 9 months ago
ML system to predict antibody manufacturability from sequence
tier1-rejuvenation-suite Stars 0 Updated 1 year ago
AI-Powered Bioinformatics Suite for Cell Rejuvenation Research - Ensemble ML, Single-Cell Analysis & Multi-Omics Integration
History
kemal joined 4 years ago.
kemal does not disclose how much they receive through Liberapay.